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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Rice-Synthetic_map1
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps 3
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker Oryza
QTL
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Physical [ View Map Type Info ]
Map Set Name: Rice - Synthetic_map1 [ View Map Set Info ]
Map Name: 3
Map Start: 0 bp
Map Stop: 36,406,689 bp
Features by Type:
384 Marker Oryza
289 QTL
673 Total

Map Features

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Items 1 to 25 of 673.       of 27 | Next
Rice - Synthetic_map1 - 3
(Click headers to resort)		 Comparative Maps
Feature Type Position (bp) Map Feature Type Position Evidence Actions
A12451 Marker Oryza 12,147,416 - 12,147,899 No other positions
E50693 Marker Oryza 25,632,867 - 25,635,906 No other positions
R3385 Marker Oryza 34,590,226 - 34,590,729 No other positions
RM81 Marker Oryza 1,945,837 - 1,945,949 No other positions
C725 Marker Oryza 2,651,067 - 2,651,630 No other positions
S1764 Marker Oryza 15,940,199 - 15,940,584 No other positions
R2224 Marker Oryza 33,067,073 - 33,067,402 No other positions
RM36 Marker Oryza 7,049,667 - 7,049,726 No other positions
C2942 Marker Oryza 15,639,559 - 15,641,156 No other positions
RZ678 Marker Oryza 7,350,288 - 7,350,653 No other positions
OSR13 Marker Oryza 7,125,911 - 7,126,131 No other positions
RG558 Marker Oryza 32,378,071 - 32,378,541 No other positions
RZ394 Marker Oryza 33,012,969 - 33,015,879 No other positions
CDO87 Marker Oryza 32,945,649 - 32,945,795 No other positions
S804 Marker Oryza 10,444,681 - 10,444,939 No other positions
R2847 Marker Oryza 28,233,409 - 28,233,830 No other positions
RM520 Marker Oryza 30,912,691 - 30,912,804 No other positions
C51477S Marker Oryza 1,033,079 - 1,033,649 No other positions
S10742 Marker Oryza 24,848,275 - 24,848,872 No other positions
R1560 Marker Oryza 7,566,265 - 7,566,689 No other positions
RM157 Marker Oryza 9,491,732 - 9,491,867 No other positions
C1329 Marker Oryza 32,174,554 - 32,174,804 No other positions
G1015 Marker Oryza 31,625,305 - 31,625,473 No other positions
RG179 Marker Oryza 22,639,210 - 22,639,270 No other positions
A123610 Marker Oryza 15,335,608 - 15,335,997 No other positions